Pioneering a New Vision of Cellular Order at the MBL

Cliff Brangwynne in the 澳门六合彩appPhysiology course, where he returned to teach this year. He is a 2006 course alumnus and in 2008, as a teaching assistant, he made a seminal discovery about cellular organization with others in the course. Credit: Dee Sullivan

When took one of t澳门六合彩app鈥檚 research courses as a graduate student, it rocked his world -- an experience reported by countless other young scientists.

But in Brangwynne鈥檚 case, when he came back to teach in the 澳门六合彩appPhysiology course in 2008, he and others made that summer would end up rocking the world of biomedical research at large, setting off a flood of scientific publications, , and inspiring several biotech companies to form as well as a deluge of and scientific awards.

Through it all the soft-spoken Brangwynne, who seems somewhat taken aback by all that has transpired, has returned many times to the 澳门六合彩appto keep exploring this new paradigm for how cells create order in the speeding molecules that spin, fluctuate, and interact within their boundaries. What they saw in worm cells in the Physiology course, and has since been confirmed in many other organisms, is cells spontaneously forming liquid-like droplets, or 鈥渃ondensates,鈥 that concentrate specific molecules in a membraneless drop, while excluding other molecules. Similar to water vapor condensing into dewdrops, they realized, condensates form through a phase separation process in the cell.

Why has that observation rocked biology? Through the work of numerous labs over the past 14 years, evidence has mounted that , from cell division to gene expression, and are involved in the development of diseases that include , , , and others.

鈥淭he 澳门六合彩appis the birthplace of this field, because so much happened here,鈥 Brangwynne says (see a summary here).鈥淲e were excited about the discovery from the beginning; we knew it had the potential to be important. But what鈥檚 been so surprising is how many different areas of science have been part of the development of the field 鈥 it鈥檚 drawn in people from structural biology, genetics, genomics, cell biology, plant biology, clinical biology, developmental biology. That鈥檚 been exciting.鈥

cliff brangwynne teaching in the 2022 澳门六合彩appPhysiology course. Credit Dee Sullivan
Cliff Brangwynne teaching in the 澳门六合彩appPhysiology course in 2022. With him are, from left, Arkady Garber of Arizona State University and Jordy Botello and Sofia Quinodoz, both of Princeton University. Credit: Diana Kenney

Brangwynne, now a professor at Princeton University, was back at 澳门六合彩appthis summer, co-teaching in the Physiology course and sharing a Whitman Center lab with of University of North Carolina, Chapel Hill. These two leaders in condensate biology also collaborated with 澳门六合彩appSenior Scientist Joshua Rosenthal to explore condensate formation in the squid nervous system.

Beyond providing a whole new perspective on cellular order, 鈥淸condensates] are a new lens for thinking about the causes of disease and for conceptualizing a disease process,鈥 Gladfelter says. 鈥淢any people hope this is also a new way to think about pharmacology,鈥 she says, including herself and Brangwynne, who are associated with two of the biotech companies that have sprung up to pursue medical implications of condensate research.

Gladfelter, Brangwynne and others are also considering the role condensates may play in adapting to climate change. Because condensate formation is temperature-sensitive, 鈥淲e think condensates will be an important piece of how plants, fungi, and free-living animals may cope with the extreme temperatures and water conditions that climate change is bringing,鈥 Gladfelter says. One can imagine that plants, for example, could be engineered to form condensates to adapt to environmental stress.

鈥淲e are trying to expand the conversation about human health to include health of the environment, which we depend upon to eat and to live,鈥 Gladfelter says.

Amy Gladfelter teaching in 澳门六合彩appPhysiology course 2022 Credit Diana Kenney
Amy Gladfelter in the 2022 澳门六合彩appPhysiology course, where she and Brangwynne co-taught a rotation on condensates, especially the structure and function of RNA within them. Credit: Diana Kenney

Back to Basics

While much has been learned about condensates since the initial observation in the Physiology course, fundamental questions are still contested. Condensates are loose assemblages of molecules 鈥 usually protein and RNA 鈥 that transiently form and dissolve throughout the cell. What triggers them to assemble, what holds them together, why they dissolve and, not least, what their function is, remain areas of vigorous investigation.

鈥淭he simple picture of condensate formation is like oil droplets separating from water,鈥 Brangwynne says. 鈥淭he fun part is, it鈥檚 not so simple. These structures are much more interesting than we than realized in the beginning. It鈥檚 more like water [drops] and water; it鈥檚 dynamic interactions in an open network that鈥檚 fully aqueous.鈥

So how does a cell control its phase transitions leading to condensates appearing or disappearing? 鈥淭emperature is just one variable,鈥 Brangwynne says. 鈥淰ery small chemical changes can shift a phase equilibrium. 鈥 We think about the transition from a soluble state to these condensed liquid states as being mediated by a whole host of biomolecular interactions, for example, presence of RNA or chemical modification of RNA, or post-translational modification of proteins. These modifications basically modulate the biomolecular interactions and then the thermodynamics, the energy of interactions [in the cell], and could cause condensation of a [liquid droplet] or, in the other direction, disruption of condensates, where they essentially melt or dissolve.鈥

Remote video URL
Clifford Brangwynne, his postdoctoral advisor Anthony Hyman, and colleagues first observed condensates forming in C. elegans embryos in the 2008 Physiology course at t澳门六合彩app. This video is from their 2009 Science paper reporting on the discovery. The condensates (P granules) are condensing on the posterior side of the cell. Credit: Brangwynne et al, Science, 2009

RNA in the Spotlight

For Brangwynne and Gladfelter, this summer at 澳门六合彩apphas been all about the structure and function of RNA in condensates, as RNA is increasingly viewed as a potent trigger for phase separation.

鈥淭he field has been pretty focused on the proteins [in condensates] over the years, because that鈥檚 more familiar to most people, honestly,鈥 Gladfelter says. 鈥淎nd yet there is a lot of information in RNA molecules within a condensate. My lab has been leading the way in terms of understanding how specific RNA features 鈥 the sequence, length, structure 鈥 impact condensate properties, such as where and when they form.鈥

Brangwynne is keenly interested in the role RNA plays in phase separation within the cell鈥檚 nucleus, where condensates are 鈥渙n, in, and all around the genome,鈥 he says. 鈥淧hase separation in the nucleus has become a massive thing,鈥 he says, with many people interested in how condensates regulate how genetic information is transcribed from DNA to RNA.

Brangwynne was the first person to (the nucleolus, work began with Tim Mitchison in 2009 at the MBL). Today, 鈥減hase separation is emerging as a general mechanism for genome organization鈥 ().

Squid. Credit Roger Hanlon
Students in the Physiology course this year looked for condensate formation in the axoplasm of the local squid, Doryteuthis pealeii. Credit: Roger Hanlon

RNA also figures in the work of 澳门六合彩appscientist Joshua Rosenthal, who discovered many years ago that squid and other their genetic instructions to make proteins (messenger RNAs) at a strikingly high rate, especially in the nervous system. This diversifies the types of proteins the cell can make, and Rosenthal is exploring whether cephalopods use this mechanism to adapt to changing environmental conditions.

鈥淢y collaboration with Josh Rosenthal happened in classic 澳门六合彩appstyle -- we just started talking one day,鈥 Brangwynne says. As it turns out, the enzymes that catalyze RNA editing 鈥渁ssociate with proteins that we know phase separate and are involved in condensate formation,鈥 Brangwynne says. Rosenthal wondered whether condensates might on some level be regulating which sites within a messenger RNA get edited, and which don鈥檛.

So this year in the Physiology course, Brangwynne and Gladfelter worked with students to test whether RNA editing enzymes can be recruited to condensates and whether condensates form in the axoplasm of squid, which Rosenthal had dissected out for them. Their preliminary data suggested that the enzymes do get recruited to condensates and that condensates form in axoplasm in a temperature-dependent manner -- interesting results that they will continue to explore.

鈥淭he 澳门六合彩apphas played such an important role in the condensate field, not just for hosting the original discovery in the Physiology course, but for nurturing the field at multiple stages, creating spaces where people can collaborate,鈥 Gladfelter says. 鈥淎nd I think we are moving into another stage right now.鈥